VCFtools/0.1.16-cpeGNU-21.12 (VCFtools-0.1.16-cpeGNU-21.12.eb)
This software is archived in the LUMI-EasyBuild-contrib GitHub repository as easybuild/easyconfigs/__archive__/v/VCFtools/VCFtools-0.1.16-cpeGNU-21.12.eb. The corresponding module would be VCFtools/0.1.16-cpeGNU-21.12.
easyblock = 'ConfigureMake'
name = 'VCFtools'
version = '0.1.16'
homepage = "https://vcftools.github.io"
whatis = [
'Description: VCFtools provides methods for working with VCF files'
]
description = """
The aim of VCFtools is to provide easily accessible methods for working with
complex genetic variation data in the form of VCF files.
"""
docurls = [
'man page vcftools in section 1'
]
toolchain = {'name': 'cpeGNU', 'version': '21.12'}
source_urls = ['https://github.com/%(namelower)s/%(namelower)s/releases/download/v%(version)s/']
sources = ['%(namelower)s-%(version)s.tar.gz']
checksums = ['dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3']
builddependencies = [
('buildtools', '%(toolchain_version)s', '', True),
]
dependencies = [
('Perl', '5.34.0'),
('HTSlib', '1.14'),
('zlib', '1.2.11'),
]
modextrapaths = {
'PERL5LIB': 'lib/perl5/site_perl'
}
# Note that the test lists only a small subset of the commands.
sanity_check_paths = {
'files': ['bin/%s' % x for x in ['%(namelower)s', 'vcf-sort', 'vcf-stats']],
'dirs': [],
}
sanity_check_commands = [ # Cannot easily try the commands as most return error codes for --help.
'vcftools --version',
]
moduleclass = 'bio'